Abstract. Magnetotactic bacteria (MTB) biomineralize magnetite and/or greigite for navigation purposes and it have been suggested that their magnetosomes make a significant contribution to the burial of Fe (and S and O) in sedimentary environments. To test this hypothesis and improve our understanding of MTBs impact on the rate of burial of these two elements we have quantified the abundance of Fe and S bound as greigite magnetofossils in laminated Baltic Sea sapropels, which were formed during periods of hypoxia and anoxia, using mineral magnetic measurements. Fluxes of Fe and S in the form of preserved greigite magnetofossils were calculated for three sedimentary sequences. The magnetosomal Fe (and S) fluxes range between 0.19 and 1.46 × 10⁻⁶ g cm⁻² yr⁻¹ (0.15 and 1.12 × 10⁻⁶ g cm⁻² yr⁻¹), and varied in time and space. The contribution of magnetosomal Fe to total Fe fluxes is relatively low, < 0.2%, although its contribution can be important in other stratified waters that suffer from hypoxia/anoxia. We show that the magnetosomal fluxes of Fe in the Baltic Sea are, however, similar to fluxes of Fe derived from mineral magnetic studies of magnetite magnetosomes in organic rich, varved freshwater lake sediments in Sweden.